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  "Title": "Lag Penalized Weighted Correlation for Time Series Clustering",
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  "Description": "Computes a time series distance measure for clustering\nbased on weighted correlation and introduction of lags. The\nlags capture delayed responses in a time series dataset. The\ntimepoints must be specified. T. Chandereng, A. Gitter (2020)\n<doi:10.1186/s12859-019-3324-1>.",
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  "Date/Publication": "2020-04-25 19:52:47 UTC",
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